Package: miRtest 2.1

miRtest: Combined miRNA- And mRNA-Testing

Package for combined miRNA- and mRNA-testing.

Authors:Stephan Artmann, Klaus Jung, Tim Beissbarth

miRtest_2.1.tar.gz
miRtest_2.1.zip(r-4.5)miRtest_2.1.zip(r-4.4)miRtest_2.1.zip(r-4.3)
miRtest_2.1.tgz(r-4.4-any)miRtest_2.1.tgz(r-4.3-any)
miRtest_2.1.tar.gz(r-4.5-noble)miRtest_2.1.tar.gz(r-4.4-noble)
miRtest_2.1.tgz(r-4.4-emscripten)miRtest_2.1.tgz(r-4.3-emscripten)
miRtest.pdf |miRtest.html✨
miRtest/json (API)

# Install 'miRtest' in R:

install.packages('miRtest', repos = c('https://stephanartmann.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

A - A
X - X
Y - Y

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3 exports 1 stars 0.61 score 74 dependencies 1 mentions 12 scripts 257 downloads

Last updated 8 months agofrom:15e03b6253. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 03 2024
R-4.5-win	OK	Sep 03 2024
R-4.5-linux	OK	Sep 03 2024
R-4.4-win	OK	Sep 03 2024
R-4.4-mac	OK	Sep 03 2024
R-4.3-win	OK	Sep 03 2024
R-4.3-mac	OK	Sep 03 2024

Exports:generate.A gs.test miR.test

Dependencies:annotate AnnotationDbi askpass Biobase BiocGenerics Biostrings bit bit64 blob cachem cli colorspace corpcor cpp11 crayon curl DBI dendextend fansi farver fastmap GenomeInfoDb GenomeInfoDbData ggplot2 GlobalAncova globaltest glue graph gridExtra GSEABase gtable httr IRanges isoband jsonlite KEGGREST labeling lattice lifecycle limma magrittr MASS Matrix memoise mgcv mime munsell nlme openssl pillar pkgconfig plogr png R6 RColorBrewer rlang RSQLite S4Vectors scales statmod survival sys tibble UCSC.utils utf8 vctrs VGAM viridis viridisLite withr XML xtable XVector zlibbioc

Vignette on miRtest package

Rendered frommiRtest.Rnwusingutils::Sweaveon Sep 03 2024.

Last update: 2022-05-23
Started: 2014-03-24

Citation

Readme and manuals

Help Manual

Help page	Topics
A	A
Contingency table.	contingency.table
Fisher method of p value combination.	fisher.combination
Turn a data...	generate.A
Internal function for gene set testing.	gs.test
Inverse-normal method for p value combination.	inverse.normal.combination
Internal algorithm: Make limma test one-sided...	limma.one.sided
internal algorithm for author's convenience.	limma.test
Internal function for author's convenience and more legible code.	m.combine
Main Function of miRtest package.	miR.test
Package Description: Two-group combined miRNA- and mRNA- expression testing.	miRtest
X	X
Y	Y

Usage by other packages (reverse dependencies)